Are Protein Language Models Compute Optimal?

التفاصيل البيبلوغرافية
العنوان: Are Protein Language Models Compute Optimal?
المؤلفون: Serrano, Yaiza, Ciudad, Álvaro, Molina, Alexis
سنة النشر: 2024
المجموعة: Computer Science
Quantitative Biology
مصطلحات موضوعية: Quantitative Biology - Biomolecules, Computer Science - Artificial Intelligence
الوصف: While protein language models (pLMs) have transformed biological research, the scaling laws governing their improvement remain underexplored. By adapting methodologies from NLP scaling laws, we investigated the optimal ratio between model parameters and training tokens within a fixed compute budget. Our study reveals that pLM sizes scale sublinearly with compute budget, showing diminishing returns in performance as model size increases, and we identify a performance plateau in training loss comparable to the one found in relevant works in the field. Our findings suggest that widely-used pLMs might not be compute-optimal, indicating that larger models could achieve convergence more efficiently. Training a 35M model on a reduced token set, we attained perplexity results comparable to larger models like ESM-2 (15B) and xTrimoPGLM (100B) with a single dataset pass. This work paves the way towards more compute-efficient pLMs, democratizing their training and practical application in computational biology.
Comment: Proceedings of the ICML 2024 Workshop on Accessible and Efficient Foundation Models for Biological Discovery, Vienna, Austria. 2024
نوع الوثيقة: Working Paper
URL الوصول: http://arxiv.org/abs/2406.07249
رقم الأكسشن: edsarx.2406.07249
قاعدة البيانات: arXiv