تقرير
Refining Boolean models with the partial most permissive scheme
| العنوان: | Refining Boolean models with the partial most permissive scheme |
|---|---|
| المؤلفون: | Boina, Nadine Ben, Mossé, Brigitte, Baudot, Anaïs, Remy, Élisabeth |
| سنة النشر: | 2024 |
| المجموعة: | Computer Science Quantitative Biology |
| مصطلحات موضوعية: | Quantitative Biology - Molecular Networks, Computer Science - Discrete Mathematics |
| الوصف: | Motivation: In systems biology, modelling strategies aim to decode how molecular components interact to generate dynamical behaviour. Boolean modelling is more and more used, but the description of the dynamics from two-levels components may be too limited to capture certain dynamical properties. %However, in Boolean models, the description of the dynamics may be too limited to capture certain dynamical properties. Multivalued logical models can overcome this limitation by allowing more than two levels for each component. However, multivaluing a Boolean model is challenging. Results: We present MRBM, a method for efficiently identifying the components of a Boolean model to be multivalued in order to capture specific fixed-point reachabilities in the asynchronous dynamics. To this goal, we defined a new updating scheme locating reachability properties in the most permissive dynamics. MRBM is supported by mathematical demonstrations and illustrated on a toy model and on two models of stem cell differentiation. |
| نوع الوثيقة: | Working Paper |
| URL الوصول: | http://arxiv.org/abs/2407.09954 |
| رقم الأكسشن: | edsarx.2407.09954 |
| قاعدة البيانات: | arXiv |
| الوصف غير متاح. |