دورية أكاديمية

A High-Quality Genome Assembly of Sorghum dochna

التفاصيل البيبلوغرافية
العنوان: A High-Quality Genome Assembly of Sorghum dochna
المؤلفون: Yu Chen, Yongbai Zhang, Hongjie Wang, Juan Sun, Lichao Ma, Fuhong Miao, Zixin Zhang, Yang Cheng, Jianwei Huang, Guofeng Yang, Zengyu Wang
المصدر: Frontiers in Genetics, Vol 13 (2022)
بيانات النشر: Frontiers Media S.A., 2022.
سنة النشر: 2022
المجموعة: LCC:Genetics
مصطلحات موضوعية: Sorghum dochna, genome, assembly, comparative genome analysis, Hi-C, Genetics, QH426-470
الوصف: Sweet sorghum (Sorghum dochna) is a high-quality bio-energy crop that also serves as food for humans and animals. However, there is little information on the genomic characteristics of S. dochna. In this study, we presented a high-quality assembly of S. dochna with PacBio long reads, Illumina short reads, high-throughput chromosome capture technology (Hi-C) sequencing data, gene annotation, and a comparative genome analysis. The results showed that the genome of S. dochna was assembled to 777 Mb with a contig N50 of 553.47 kb and a scaffold N50 of 727.11 kb. In addition, the gene annotation predicted 37,971 genes and 39,937 transcripts in the genome of S. dochna. A Venn analysis revealed a set of 7,988 common gene annotations by integrating five databases. A Cafe software analysis showed that 191 gene families were significantly expanded, while 3,794 were significantly contracted in S. dochna. A GO enrichment analysis showed that the expanded gene families were primarily clustered in the metabolic process, DNA reconstruction, and DNA binding among others. The high-quality genome map constructed in this study provides a biological basis for the future analysis of the biological characteristics of S. dochna, which is crucial for its breeding.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 1664-8021
Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.844385/full; https://doaj.org/toc/1664-8021
DOI: 10.3389/fgene.2022.844385
URL الوصول: https://doaj.org/article/0239e33143c84bc9808ffbae231fc01b
رقم الأكسشن: edsdoj.0239e33143c84bc9808ffbae231fc01b
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:16648021
DOI:10.3389/fgene.2022.844385