دورية أكاديمية

Determination of the nucleotide or amino acid composition of genome or protein sequences by using natural vector method and convex hull principle

التفاصيل البيبلوغرافية
العنوان: Determination of the nucleotide or amino acid composition of genome or protein sequences by using natural vector method and convex hull principle
المؤلفون: Xiaopei Jiao, Shaojun Pei, Zeju Sun, Jiayi Kang, Stephen S.-T. Yau
المصدر: Fundamental Research, Vol 1, Iss 5, Pp 559-564 (2021)
بيانات النشر: KeAi Communications Co. Ltd., 2021.
سنة النشر: 2021
المجموعة: LCC:Science (General)
مصطلحات موضوعية: Natural vector, Convex hull, New sequences, Optimization, Science (General), Q1-390
الوصف: Although with the continuous development of sequencing technology, the number of genome and protein sequences has grown rapidly, these sequences are only a small part of nature. Biologically, it is still a challenging and important problem to detect and predict some new genome or protein sequences based on real sequence data, which motivates us to solve the problem mathematically. The first step to predict the new sequences is determining the nucleotide or amino acid composition of them. In this paper, we apply natural vector method and convex hull principle to determine the nucleotide or amino acid composition of new genome or protein sequences. Our algorithm is based on optimization strategy. The SARS-CoV-2 genome and protein datasets are used to verify the feasibility of our algorithm. Numerical experiments show that our algorithm can detect and predict possible number of each nucleotide or amino acid of genome and protein sequence with respect to the second order natural vectors.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2667-3258
Relation: http://www.sciencedirect.com/science/article/pii/S2667325821001564; https://doaj.org/toc/2667-3258
DOI: 10.1016/j.fmre.2021.08.010
URL الوصول: https://doaj.org/article/1eeb57e6356544b79415289aab553600
رقم الأكسشن: edsdoj.1eeb57e6356544b79415289aab553600
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:26673258
DOI:10.1016/j.fmre.2021.08.010