دورية أكاديمية

Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

التفاصيل البيبلوغرافية
العنوان: Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis
المؤلفون: Donglin Zhou, Yimin Zhu, Peng Jiang, Tongfu Zhang, Jianfeng Zhuang, Tao Li, Linzeng Qi, Yunyan Wang
المصدر: Biological Research, Vol 56, Iss 1, Pp 1-18 (2023)
بيانات النشر: BMC, 2023.
سنة النشر: 2023
المجموعة: LCC:Biology (General)
مصطلحات موضوعية: Intracranial aneurysm, Pyroptosis, Inflammatory cell death, Gene expression omnibus, Bioinformatics analysis, Biology (General), QH301-705.5
الوصف: Abstract Background Intracranial aneurysm (IA) is the most common cerebrovascular disease, and subarachnoid hemorrhage caused by its rupture can seriously impede nerve function. Pyroptosis is an inflammatory mode of cell death whose underlying mechanisms involving the occurrence and rupture of IAs remain unclear. In this study, using bioinformatics analysis, we identified the potential pyroptosis-related genes (PRGs) and performed their inflammatory response mechanisms in IAs. Methods The mRNA expression matrix of the IA tissue was obtained from the Gene Expression Omnibus database, and 51 PRGs were obtained from previous articles collected from PubMed. The differentially expressed PRGs (DEPRGs) were performed using R software. Subsequently, we performed enrichment analysis, constructed a protein–protein interaction network, performed weighted gene coexpression network analysis (WGCNA) and external validation using another dataset, and identified a correlation between hub genes and immune cell infiltration. Finally, the expression and tissue distribution of these hub genes in IA tissues were detected using Western blotting and immunohistochemical (IHC) staining. Results In total, 12 DEPRGs associated with IA were identified in our analysis, which included 11 up-regulated and one down-regulated genes. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses revealed that the DEPRGs were mostly enriched in the NOD-like receptor signaling pathway, interleukin-1 beta production, and the inflammasome complex. Three hub genes, NLRP3, IL1B and IL18, were identified using Cytoscape software and the WGCNA correlation module, and external validation revealed statistically significant differences between the expression of these hub genes in the ruptured and unruptured aneurysm groups (p 0.75. Immune cell infiltration analysis suggested that the hub genes are related to CD8 T cell, macrophages and mast cells. Finally, IHC staining revealed that the protein levels of these hub genes were higher in ruptured and unruptured IA tissues than in normal tissues (p
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 0717-6287
Relation: https://doaj.org/toc/0717-6287
DOI: 10.1186/s40659-023-00464-z
URL الوصول: https://doaj.org/article/42d8318724c84879871339049aa28e53
رقم الأكسشن: edsdoj.42d8318724c84879871339049aa28e53
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:07176287
DOI:10.1186/s40659-023-00464-z