دورية أكاديمية
NotI Microarrays: Novel Epigenetic Markers for Early Detection and Prognosis of High Grade Serous Ovarian Cancer
العنوان: | NotI Microarrays: Novel Epigenetic Markers for Early Detection and Prognosis of High Grade Serous Ovarian Cancer |
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المؤلفون: | Vera N. Senchenko, Eugene Zabarovsky, Michael Lerman, Surya P. Yenamandra, Eleonora A. Braga, Anna V. Gerashchenko, Vasily V. Gordiyuk, Ilya Ignatjev, George S. Krasnov, Tatiana Pavlova, Vladimir Kashuba, Alexey A. Dmitriev |
المصدر: | International Journal of Molecular Sciences, Vol 13, Iss 10, Pp 13352-13377 (2012) |
بيانات النشر: | MDPI AG, 2012. |
سنة النشر: | 2012 |
المجموعة: | LCC:Biology (General) LCC:Chemistry |
مصطلحات موضوعية: | ovarian cancer, biomarkers, NotI microarrays, epigenetics, early detection of ovarian cancer, prognosis of ovarian cancer, Biology (General), QH301-705.5, Chemistry, QD1-999 |
الوصف: | Chromosome 3-specific NotI microarray (NMA) containing 180 clones with 188 genes was used in the study to analyze 18 high grade serous ovarian cancer (HGSOC) samples and 7 benign ovarian tumors. We aimed to find novel methylation-dependent biomarkers for early detection and prognosis of HGSOC. Thirty five NotI markers showed frequency of methylation/deletion more or equal to 17%. To check the results of NMA hybridizations several samples for four genes (LRRC3B, THRB, ITGA9 and RBSP3 (CTDSPL)) were bisulfite sequenced and confirmed the results of NMA hybridization. A set of eight biomarkers: NKIRAS1/RPL15, THRB, RBPS3 (CTDSPL), IQSEC1, NBEAL2, ZIC4, LOC285205 and FOXP1, was identified as the most prominent set capable to detect both early and late stages of ovarian cancer. Sensitivity of this set is equal to (72 ± 11)% and specificity (94 ± 5)%. Early stages represented the most complicated cases for detection. To distinguish between Stages I + II and Stages III + IV of ovarian cancer the most perspective set of biomarkers would include LOC285205, CGGBP1, EPHB1 and NKIRAS1/RPL15. The sensitivity of the set is equal to (80 ± 13)% and the specificity is (88 ± 12)%. Using this technique we plan to validate this panel with new epithelial ovarian cancer samples and add markers from other chromosomes. |
نوع الوثيقة: | article |
وصف الملف: | electronic resource |
اللغة: | English |
تدمد: | 1422-0067 |
Relation: | http://www.mdpi.com/1422-0067/13/10/13352; https://doaj.org/toc/1422-0067 |
DOI: | 10.3390/ijms131013352 |
URL الوصول: | https://doaj.org/article/4e00220ee5524414b899283209656a74 |
رقم الأكسشن: | edsdoj.4e00220ee5524414b899283209656a74 |
قاعدة البيانات: | Directory of Open Access Journals |
تدمد: | 14220067 |
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DOI: | 10.3390/ijms131013352 |