دورية أكاديمية

Hub genes, a diagnostic model, and immune infiltration based on ferroptosis-linked genes in schizophrenia

التفاصيل البيبلوغرافية
العنوان: Hub genes, a diagnostic model, and immune infiltration based on ferroptosis-linked genes in schizophrenia
المؤلفون: Kun Lian, Yongmei Li, Wei Yang, Jing Ye, Hongbing Liu, Tianlan Wang, Guangya Yang, Yuqi Cheng, Xiufeng Xu
المصدر: IBRO Neuroscience Reports, Vol 16, Iss , Pp 317-328 (2024)
بيانات النشر: Elsevier, 2024.
سنة النشر: 2024
المجموعة: LCC:Neurosciences. Biological psychiatry. Neuropsychiatry
مصطلحات موضوعية: Schizophrenia, Ferroptosis, WGCNA, Hub gene, Diagnostic model, Immune infiltration, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571
الوصف: Background: Schizophrenia (SCZ) is a prevalent and serious mental disorder, and the exact pathophysiology of this condition is not fully understood. In previous studies, it has been proven that ferroprotein levels are high in SCZ. It has also been shown that this inflammatory response may modify fibromodulin. Accumulating evidence indicates a strong link between metabolism and ferroptosis. Therefore, the present study aims to identify ferroptosis‐linked hub genes to further investigate the role that ferroptosis plays in the development of SCZ. Material and methods: From the GEO database, four microarray data sets on SCZ (GSE53987, GSE38481, GSE18312, and GSE38484) and ferroptosis‐linked genes were extracted. Using the prefrontal cortex expression matrix of SCZ patients and healthy individuals as the control group from GSE53987, weighted gene co‐expression network analysis (WGCNA) was performed to discover SCZ‐linked module genes. From the feed, genes associated with ferroptosis were retrieved. The intersection of the module and ferroptosis-linked genes was done to obtain the hub genes. Then, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, and Gene Set Enrichment Analysis (GSEA) were conducted. The SCZ diagnostic model was established using logistic regression, and the GSE38481, GSE18312, and GSE38484 data sets were used to validate the model. Finally, hub genes linked to immune infiltration were examined. Results: A total of 13 SCZ module genes and 7 hub genes linked to ferroptosis were obtained: DECR1, GJA1, EFN2L2, PSAT1, SLC7A11, SOX2, and YAP1. The GO/KEGG/GSEA study indicated that these hub genes were predominantly enriched in mitochondria and lipid metabolism, oxidative stress, immunological inflammation, ferroptosis, Hippo signaling pathway, AMP‐activated protein kinase pathway, and other associated biological processes. The diagnostic model created using these hub genes was further confirmed using the data sets of three blood samples from patients with SCZ. The immune infiltration data showed that immune cell dysfunction enhanced ferroptosis and triggered SCZ. Conclusion: In this study, seven critical genes that are strongly associated with ferroptosis in patients with SCZ were discovered, a valid clinical diagnostic model was built, and a novel therapeutic target for the treatment of SCZ was identified by the investigation of immune infiltration.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2667-2421
Relation: http://www.sciencedirect.com/science/article/pii/S2667242124000071; https://doaj.org/toc/2667-2421
DOI: 10.1016/j.ibneur.2024.01.007
URL الوصول: https://doaj.org/article/4e68f675e31b453f9e7f453adfd1b5e6
رقم الأكسشن: edsdoj.4e68f675e31b453f9e7f453adfd1b5e6
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:26672421
DOI:10.1016/j.ibneur.2024.01.007