دورية أكاديمية

Construction of an immunogenic cell death-based risk score prognosis model in breast cancer

التفاصيل البيبلوغرافية
العنوان: Construction of an immunogenic cell death-based risk score prognosis model in breast cancer
المؤلفون: Yanling Li, Jianyuan Feng, Ting Wang, Mingcui Li, Hanyu Zhang, Zhiyuan Rong, Weilun Cheng, Yunqiang Duan, Ziang Chen, Anbang Hu, Tianshui Yu, Jiarui Zhang, Yuhang Shang, Yiyun Zou, Fei Ma, Baoliang Guo
المصدر: Frontiers in Genetics, Vol 13 (2022)
بيانات النشر: Frontiers Media S.A., 2022.
سنة النشر: 2022
المجموعة: LCC:Genetics
مصطلحات موضوعية: immunogenic cell death, immunotherapy, breast cancer, prognosis model, RNA-seq, Genetics, QH426-470
الوصف: Immunogenic cell death (ICD) is a form of regulated cell death that elicits immune response. Common inducers of ICD include cancer chemotherapy and radiation therapy. A better understanding of ICD might contribute to modify the current regimens of anti-cancer therapy, especially immunotherapy. This study aimed to identify ICD-related prognostic gene signatures in breast cancer (BC). An ICD-based gene prognostic signature was developed using Lasso-cox regression and Kaplan-Meier survival analysis based on datasets acquired from the Cancer Genome Atlas and Gene Expression Omnibus. A nomogram model was developed to predict the prognosis of BC patients. Gene Set Enrichment Analysis (GESA) and Gene Set Variation Analysis (GSVA) were used to explore the differentially expressed signaling pathways in high and low-risk groups. CIBERSORT and ESTIMATE algorithms were performed to investigate the difference of immune status in tumor microenvironment of different risk groups. Six genes (CALR, CLEC9A, BAX, TLR4, CXCR3, and PIK3CA) were selected for construction and validation of the prognosis model of BC based on public data. GSEA and GSVA analysis found that immune-related gene sets were enriched in low-risk group. Moreover, immune cell infiltration analysis showed that the immune features of the high-risk group were characterized by higher infiltration of tumor-associated macrophages and a lower proportion of CD8+ T cells, suggesting an immune evasive tumor microenvironment. We constructed and validated an ICD-based gene signature for predicting prognosis of breast cancer patients. Our model provides a tool with good discrimination and calibration abilities to predict the prognosis of BC, especially triple-negative breast cancer (TNBC).
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 1664-8021
Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.1069921/full; https://doaj.org/toc/1664-8021
DOI: 10.3389/fgene.2022.1069921
URL الوصول: https://doaj.org/article/53a8f66d4b6545808aef5dc305aff800
رقم الأكسشن: edsdoj.53a8f66d4b6545808aef5dc305aff800
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:16648021
DOI:10.3389/fgene.2022.1069921