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Environmental and Socio–Cultural Factors Impacting the Unique Gene Pool Pattern of Mae Hong-Son Chicken

التفاصيل البيبلوغرافية
العنوان: Environmental and Socio–Cultural Factors Impacting the Unique Gene Pool Pattern of Mae Hong-Son Chicken
المؤلفون: Wongsathit Wongloet, Worapong Singchat, Aingorn Chaiyes, Hina Ali, Surachai Piangporntip, Nattakan Ariyaraphong, Trifan Budi, Worawit Thienpreecha, Wannapa Wannakan, Autchariyapron Mungmee, Kittipong Jaisamut, Thanyapat Thong, Thitipong Panthum, Syed Farhan Ahmad, Artem Lisachov, Warong Suksavate, Narongrit Muangmai, Rattanaphon Chuenka, Mitsuo Nunome, Wiyada Chamchumroon, Kyudong Han, Aniroot Nuangmek, Yoichi Matsuda, Prateep Duengkae, Kornsorn Srikulnath
المصدر: Animals, Vol 13, Iss 12, p 1949 (2023)
بيانات النشر: MDPI AG, 2023.
سنة النشر: 2023
المجموعة: LCC:Veterinary medicine
LCC:Zoology
مصطلحات موضوعية: gene pool, selective sweep, Mae Hong Son chicken, habitat suitability, food security, Veterinary medicine, SF600-1100, Zoology, QL1-991
الوصف: Understanding the genetic diversity of domestic chicken breeds under the impact of socio–cultural and ecological dynamics is vital for the conservation of natural resources. Mae Hong Son chicken is a local breed of North Thai domestic chicken widely distributed in Mae Hong Son Province, Thailand; however, its genetic characterization, origin, and diversity remain poorly understood. Here, we studied the socio–cultural, environmental, and genetic aspects of the Mae Hong Son chicken breed and investigated its diversity and allelic gene pool. We genotyped 28 microsatellite markers and analyzed mitochondrial D-loop sequencing data to evaluate genetic diversity and assessed spatial habitat suitability using maximum entropy modeling. Sequence diversity analysis revealed a total of 188 genotyped alleles, with overall nucleotide diversity of 0.014 ± 0.007, indicating that the Mae Hong Son chicken population is genetically highly diverse, with 35 (M1–M35) haplotypes clustered into haplogroups A, B, E, and F, mostly in the North ecotype. Allelic gene pool patterns showed a unique DNA fingerprint of the Mae Hong Son chicken, as compared to other breeds and red junglefowl. A genetic introgression of some parts of the gene pool of red junglefowl and other indigenous breeds was identified in the Mae Hong Son chicken, supporting the hypothesis of the origin of the Mae Hong Son chicken. During domestication in the past 200–300 years after the crossing of indigenous chickens and red junglefowl, the Mae Hong Son chicken has adapted to the highland environment and played a significant socio–cultural role in the Northern Thai community. The unique genetic fingerprint of the Mae Hong Son chicken, retaining a high level of genetic variability that includes a dynamic demographic and domestication history, as well as a range of ecological factors, might reshape the adaptation of this breed under selective pressure.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2076-2615
Relation: https://www.mdpi.com/2076-2615/13/12/1949; https://doaj.org/toc/2076-2615
DOI: 10.3390/ani13121949
URL الوصول: https://doaj.org/article/5520d26f9f024383a5c0dd09eaa2bbc6
رقم الأكسشن: edsdoj.5520d26f9f024383a5c0dd09eaa2bbc6
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:20762615
DOI:10.3390/ani13121949