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oposSOM-Browser: an interactive tool to explore omics data landscapes in health science

التفاصيل البيبلوغرافية
العنوان: oposSOM-Browser: an interactive tool to explore omics data landscapes in health science
المؤلفون: Henry Loeffler-Wirth, Jasmin Reikowski, Siras Hakobyan, Jonas Wagner, Hans Binder
المصدر: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-5 (2020)
بيانات النشر: BMC, 2020.
سنة النشر: 2020
المجموعة: LCC:Computer applications to medicine. Medical informatics
LCC:Biology (General)
مصطلحات موضوعية: Interactive data analysis, Transcriptomics, Results browser, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5
الوصف: Abstract Background oposSOM is a comprehensive, machine learning based open-source data analysis software combining functionalities such as diversity analyses, biomarker selection, function mining, and visualization. Results These functionalities are now available as interactive web-browser application for a broader user audience interested in extracting detailed information from high-throughput omics data sets pre-processed by oposSOM. It enables interactive browsing of single-gene and gene set profiles, of molecular ‘portrait landscapes’, of associated phenotype diversity, and signalling pathway activation patterns. Conclusion The oposSOM-Browser makes available interactive data browsing for five transcriptome data sets of cancer (melanomas, B-cell lymphomas, gliomas) and of peripheral blood (sepsis and healthy individuals) at www.izbi.uni-leipzig.de/opossom-browser .
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 1471-2105
Relation: http://link.springer.com/article/10.1186/s12859-020-03806-w; https://doaj.org/toc/1471-2105
DOI: 10.1186/s12859-020-03806-w
URL الوصول: https://doaj.org/article/a5bf3188f77445a3922ef4b678b3d89e
رقم الأكسشن: edsdoj.5bf3188f77445a3922ef4b678b3d89e
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:14712105
DOI:10.1186/s12859-020-03806-w