دورية أكاديمية

Development of a prognostic risk model of uveal melanoma based on N7-methylguanosine-related regulators

التفاصيل البيبلوغرافية
العنوان: Development of a prognostic risk model of uveal melanoma based on N7-methylguanosine-related regulators
المؤلفون: Pingfan Wu, Qian Zhang, Peng Zhong, Li Chai, Qiong Luo, Chengyou Jia
المصدر: Hereditas, Vol 161, Iss 1, Pp 1-13 (2024)
بيانات النشر: BMC, 2024.
سنة النشر: 2024
المجموعة: LCC:Genetics
مصطلحات موضوعية: Uveal melanoma, N7-methylguanosine, Prognostic Risk Model, Immune infiltration, Immune checkpoint, Genetics, QH426-470
الوصف: Abstract Background Uveal melanoma (UVM) stands as the predominant type of primary intraocular malignancy among adults. The clinical significance of N7-methylguanosine (m7G), a prevalent RNA modifications, in UVM remains unclear. Methods Primary information from 80 UVM patients were analyzed as the training set, incorporating clinical information, mutation annotations and mRNA expression obtained from The Cancer Genome Atlas (TCGA) website. The validation set was carried out using Gene Expression Omnibus (GEO) database GSE22138 and GSE84976. Kaplan–Meier and Cox regression of univariate analyses were subjected to identify m7G-related regulators as prognostic genes. Result A prognostic risk model comprising EIF4E2, NUDT16, SNUPN and WDR4 was established through Cox regression of LASSO. Evaluation of the model’s predictability for UVM patients’ prognosis by Receiver Operating Characteristic (ROC) curves in the training set, demonstrated excellent performance Area Under the Curve (AUC) > 0.75. The high-risk prognosis within the TCGA cohort exhibit a notable worse outcome. Additionally, an independent correlation between the risk score and overall survival (OS) among UVM patients were identified. External validation of this model was carried out using the validation sets (GSE22138 and GSE84976). Immune-related analysis revealed that patients with high score of m7G-related risk model exhibited elevated level of immune infiltration and immune checkpoint gene expression. Conclusion We have developed a risk prediction model based on four m7G-related regulators, facilitating effective estimate UVM patients’ survival by clinicians. Our findings shed novel light on essential role of m7G-related regulators in UVM and suggest potential novel targets for the diagnosis, prognosis and therapy of UVM.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 1601-5223
Relation: https://doaj.org/toc/1601-5223
DOI: 10.1186/s41065-024-00324-0
URL الوصول: https://doaj.org/article/5c0b326a5856459b8a5af9c1fcb1e7e1
رقم الأكسشن: edsdoj.5c0b326a5856459b8a5af9c1fcb1e7e1
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:16015223
DOI:10.1186/s41065-024-00324-0