دورية أكاديمية

Development and validation of a genomic nomogram based on a ceRNA network for comprehensive analysis of obstructive sleep apnea

التفاصيل البيبلوغرافية
العنوان: Development and validation of a genomic nomogram based on a ceRNA network for comprehensive analysis of obstructive sleep apnea
المؤلفون: Wang Liu, Xishi Sun, Jiewen Huang, Jinjian Zhang, Zhengshi Liang, Jinru Zhu, Tao Chen, Yu Zeng, Min Peng, Xiongbin Li, Lijuan Zeng, Wei Lei, Junfen Cheng
المصدر: Frontiers in Genetics, Vol 14 (2023)
بيانات النشر: Frontiers Media S.A., 2023.
سنة النشر: 2023
المجموعة: LCC:Genetics
مصطلحات موضوعية: obstructive sleep apnea, biomarkers, ceRNA, lncRNA, nomogram, Genetics, QH426-470
الوصف: Objectives: Some ceRNA associated with lncRNA have been considered as possible diagnostic and therapeutic biomarkers for obstructive sleep apnea (OSA). We intend to identify the potential hub genes for the development of OSA, which will provide a foundation for the study of the molecular mechanism underlying OSA and for the diagnosis and treatment of OSA.Methods: We collected plasma samples from OSA patients and healthy controls for the detection of ceRNA using a chip. Based on the differential expression of lncRNA, we identified the target genes of miRNA that bind to lncRNAs. We then constructed lncRNA-related ceRNA networks, performed functional enrichment analysis and protein-protein interaction analysis, and performed internal and external validation of the expression levels of stable hub genes. Then, we conducted LASSO regression analysis on the stable hub genes, selected relatively significant genes to construct a simple and easy-to-use nomogram, validated the nomogram, and constructed the core ceRNA sub-network of key genes.Results: We successfully identified 282 DElncRNAs and 380 DEmRNAs through differential analysis, and we constructed an OSA-related ceRNA network consisting of 292 miRNA-lncRNAs and 41 miRNA-mRNAs. Through PPI and hub gene selection, we obtained 7 additional robust hub genes, CCND2, WT1, E2F2, IRF1, BAZ2A, LAMC1, and DAB2. Using LASSO regression analysis, we created a nomogram with four predictors (CCND2, WT1, E2F2, and IRF1), and its area under the curve (AUC) is 1. Finally, we constructed a core ceRNA sub-network composed of 74 miRNA-lncRNA and 7 miRNA-mRNA nodes.Conclusion: Our study provides a new foundation for elucidating the molecular mechanism of lncRNA in OSA and for diagnosing and treating OSA.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 1664-8021
Relation: https://www.frontiersin.org/articles/10.3389/fgene.2023.1084552/full; https://doaj.org/toc/1664-8021
DOI: 10.3389/fgene.2023.1084552
URL الوصول: https://doaj.org/article/75c50ec11d2d43f19c56a9e4cccbdf28
رقم الأكسشن: edsdoj.75c50ec11d2d43f19c56a9e4cccbdf28
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:16648021
DOI:10.3389/fgene.2023.1084552