دورية أكاديمية

Developing a standardized but extendable framework to increase the findability of infectious disease datasets

التفاصيل البيبلوغرافية
العنوان: Developing a standardized but extendable framework to increase the findability of infectious disease datasets
المؤلفون: Ginger Tsueng, Marco A. Alvarado Cano, José Bento, Candice Czech, Mengjia Kang, Lars Pache, Luke V. Rasmussen, Tor C. Savidge, Justin Starren, Qinglong Wu, Jiwen Xin, Michael R. Yeaman, Xinghua Zhou, Andrew I. Su, Chunlei Wu, Liliana Brown, Reed S. Shabman, Laura D. Hughes, the NIAID Systems Biology Data Dissemination Working Group
المصدر: Scientific Data, Vol 10, Iss 1, Pp 1-13 (2023)
بيانات النشر: Nature Portfolio, 2023.
سنة النشر: 2023
المجموعة: LCC:Science
مصطلحات موضوعية: Science
الوصف: Abstract Biomedical datasets are increasing in size, stored in many repositories, and face challenges in FAIRness (findability, accessibility, interoperability, reusability). As a Consortium of infectious disease researchers from 15 Centers, we aim to adopt open science practices to promote transparency, encourage reproducibility, and accelerate research advances through data reuse. To improve FAIRness of our datasets and computational tools, we evaluated metadata standards across established biomedical data repositories. The vast majority do not adhere to a single standard, such as Schema.org, which is widely-adopted by generalist repositories. Consequently, datasets in these repositories are not findable in aggregation projects like Google Dataset Search. We alleviated this gap by creating a reusable metadata schema based on Schema.org and catalogued nearly 400 datasets and computational tools we collected. The approach is easily reusable to create schemas interoperable with community standards, but customized to a particular context. Our approach enabled data discovery, increased the reusability of datasets from a large research consortium, and accelerated research. Lastly, we discuss ongoing challenges with FAIRness beyond discoverability.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2052-4463
Relation: https://doaj.org/toc/2052-4463
DOI: 10.1038/s41597-023-01968-9
URL الوصول: https://doaj.org/article/9a98c238656940ee8cc5844ae1782732
رقم الأكسشن: edsdoj.9a98c238656940ee8cc5844ae1782732
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:20524463
DOI:10.1038/s41597-023-01968-9