دورية أكاديمية

Genome‐wide characterization and expression analysis of GATA transcription factors under combination of light wavelengths and drought stress in potato

التفاصيل البيبلوغرافية
العنوان: Genome‐wide characterization and expression analysis of GATA transcription factors under combination of light wavelengths and drought stress in potato
المؤلفون: Emre Aksoy, Caner Yavuz, Ayten Kübra Yagiz, Necdet Mehmet Unel, Mehmet Cengiz Baloğlu
المصدر: Plant Direct, Vol 8, Iss 4, Pp n/a-n/a (2024)
بيانات النشر: Wiley, 2024.
سنة النشر: 2024
المجموعة: LCC:Botany
مصطلحات موضوعية: abiotic stress, drought, GATA, light stress, Solanum tuberosum, Botany, QK1-989
الوصف: Abstract GATA is one of the prominent transcription factor families conserved among many organisms in eukaryotes and has different biological roles in many pathways, particularly in light regulation in plants. Although GATA transcription factors (TFs) have been identified in different crop species, their roles in abiotic stress tolerance have not been studied in potato. In this study, we identified 32 GATA TFs in potato (Solanum tuberosum) by in silico analyses, and expression levels of selected six genes were investigated in drought‐tolerant (Sante) and sensitive (Agria) cultivars under light, drought, and combined (light + drought) stress conditions. According to the phylogenetic results, StGATA TFs were divided into four main groups (I, II, III, and IV) and different sub‐groups in I and II (eight and five, respectively). StGATA genes were uniformly localized to each chromosome with a conserved exon/intron structure. The presence of cis‐elements within the StGATA family further supported the possible involvement in abiotic stress tolerance and light response, tissue‐specific expression, and hormonal regulation. Additional PPI investigations showed that these networks, especially for Groups I, II, and IV, play a significant role in response to light and drought stress. Six StGATAs were chosen from these groups for expressional profiling, and their expression in both Sante and Agria was mainly downregulated under purple and red lights, drought, and combined stress (blue + drought and purple + drought). The interactomes of selected StGATAs, StGATA3, StGATA24, and StGATA29 were analyzed, and the accessions with GATA motifs were checked for expression. The results showed that the target proteins, cyclin‐P3‐1, SPX domain‐containing protein 1, mitochondrial calcium uniporter protein 2, mitogen‐activated protein kinase kinase kinase YODA, and splicing factor 3 B subunit 4‐like, mainly play a role in phytochrome‐mediated stomatal patterning, development, and activity. Understanding the interactions between drought stress and the light response mechanisms in potato plants is essential. It will eventually be possible to enhance potato resilience to climate change by manipulating the TFs that play a role in these pathways.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2475-4455
Relation: https://doaj.org/toc/2475-4455
DOI: 10.1002/pld3.569
URL الوصول: https://doaj.org/article/b5482a6d8db84c2bb507d9fa591bde9f
رقم الأكسشن: edsdoj.b5482a6d8db84c2bb507d9fa591bde9f
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:24754455
DOI:10.1002/pld3.569