مورد إلكتروني
Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres
| العنوان: | Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres |
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| بيانات النشر: | Public Library of Science (PLoS) 2014-04-17 |
| تفاصيل مُضافة: | Universidad de Alicante. Departamento de Fisiología, Genética y Microbiología Swan, Brandon K. Chaffin, Mark D. Martinez-Garcia, Manuel Morrison, Hilary G. Field, Erin K. Poulton, Nicole J. Masland, E. Dashiell P. Harris, Christopher C. Sczyrba, Alexander Chain, Patrick S.G. Koren, Sergey Woyke, Tanja Stepanauskas, Ramunas |
| نوع الوثيقة: | Electronic Resource |
| مستخلص: | Marine Group I (MGI) Thaumarchaeota are one of the most abundant and cosmopolitan chemoautotrophs within the global dark ocean. To date, no representatives of this archaeal group retrieved from the dark ocean have been successfully cultured. We used single cell genomics to investigate the genomic and metabolic diversity of thaumarchaea within the mesopelagic of the subtropical North Pacific and South Atlantic Ocean. Phylogenetic and metagenomic recruitment analysis revealed that MGI single amplified genomes (SAGs) are genetically and biogeographically distinct from existing thaumarchaea cultures obtained from surface waters. Confirming prior studies, we found genes encoding proteins for aerobic ammonia oxidation and the hydrolysis of urea, which may be used for energy production, as well as genes involved in 3-hydroxypropionate/4-hydroxybutyrate and oxidative tricarboxylic acid pathways. A large proportion of protein sequences identified in MGI SAGs were absent in the marine cultures Cenarchaeum symbiosum and Nitrosopumilus maritimus, thus expanding the predicted protein space for this archaeal group. Identifiable genes located on genomic islands with low metagenome recruitment capacity were enriched in cellular defense functions, likely in response to viral infections or grazing. We show that MGI Thaumarchaeota in the dark ocean may have more flexibility in potential energy sources and adaptations to biotic interactions than the existing, surface-ocean cultures. |
| مصطلحات الفهرس: | Chemoautotrophs, Marine Group I Thaumarchaeota, Genomic and metabolic diversity, Subtropical, info:eu-repo/semantics/article |
| URL: | |
| الإتاحة: | Open access content. Open access content info:eu-repo/semantics/openAccess This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. |
| أرقام أخرى: | ESALI oai:rua.ua.es:10045/36812 Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, et al. (2014) Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres. PLoS ONE 9(4): e95380. doi:10.1371/journal.pone.0095380 1932-6203 10.1371/journal.pone.0095380 1286026666 |
| المصدر المساهم: | UNIV DE ALICANTE From OAIster®, provided by the OCLC Cooperative. |
| رقم الأكسشن: | edsoai.on1286026666 |
| قاعدة البيانات: | OAIster |
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